NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold LPfeb09P12500mDRAFT_1011226

Scaffold LPfeb09P12500mDRAFT_1011226


Overview

Basic Information
Taxon OID3300000248 Open in IMG/M
Scaffold IDLPfeb09P12500mDRAFT_1011226 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - February 2009 P12 500m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1219
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameP12, Pacific Ocean
CoordinatesLat. (o)48.97Long. (o)-130.666667Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F099860Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
LPfeb09P12500mDRAFT_10112261F099860N/ATSYTATAAVGNTTVNVMEAVGAEWDTIQMNSTDGAPESNAGEKIILEDASESDDGDMTFLQMEKQTTGTKMNYFFTIAGSDGAGTLTVARQAITLNSSTFKEAGDTETSDSGIMQQVSADITSAAVTMA*

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