Scaffold LPaug09P26500mDRAFT_1043452

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold LPaug09P26500mDRAFT_1043452

Scaffold LPaug09P26500mDRAFT_1043452

Overview

Basic Information
Taxon OID	3300000247 Open in IMG/M
Scaffold ID	LPaug09P26500mDRAFT_1043452 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P26 500m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	542
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	P26, Pacific Ocean
Coordinates	Lat. (^o)	50.0	Long. (^o)	-145.0	Alt. (m)		Depth (m)	500
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F033843	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
LPaug09P26500mDRAFT_10434522	F033843	N/A	EKWSGESVTLYTTLAGLSMIDAKQTFMMDEYRSYFDEIEPITYAHEGNPLMGESPTNDRVVVVKLVTGALTFYGLNKMKEVNRKKALTWLNVFYLIVVIHNNSLGLSINL*

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