Scaffold SA_S2_NOR18_50mDRAFT_1004990

Overview

Basic Information

• Taxon OID: 3300000243
• Scaffold ID: SA_S2_NOR18_50mDRAFT_1004990
• Source Dataset Name: Svalbard Archipelago station 2 sample NOR 18_50m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3013
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes → Mollicutes → Acholeplasmatales → Acholeplasmataceae → unclassified Acholeplasmataceae → Acholeplasmataceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location

• Location Name: Norway: Adventfjord, Svalbard Archipelago
• Coordinates
  • Lat. (^o): 78.243786
  • Long. (^o): 15.656147
  • Depth (m): 50

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038175	Metagenome / Metatranscriptome	166	N
F041711	Metagenome / Metatranscriptome	159	N

Sequences

Protein ID	Family	RBS	Sequence
SA_S2_NOR18_50mDRAFT_10049901	F041711	N/A	TAHNTAKTIFMQPQQDGVEMKPNNKGYGANDTSHSATSWRPSITGDLRYRNPDKQKNTAPKLKGAPTNSGGILPADWDMFKRVMMNVKDAGKKYMYIPKVTSFYRNREGKF*
SA_S2_NOR18_50mDRAFT_10049906	F038175	N/A	MKNVKRVGFFKLGKAIKFNENSWGAIGGDCEPKQLINSIAKRNPNIEYWILSPNDLGRVRAKEKPAVQSLFGDPVIAELAAEPNIHEFHSKMENRKSADETVKFIKELDLDFIFFYT