Scaffold TDF_OR_ARG05_123mDRAFT_1027674

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold TDF_OR_ARG05_123mDRAFT_1027674

Scaffold TDF_OR_ARG05_123mDRAFT_1027674

Overview

Basic Information
Taxon OID	3300000242 Open in IMG/M
Scaffold ID	TDF_OR_ARG05_123mDRAFT_1027674 Open in IMG/M
Source Dataset Name	Marine microbial communities from chronically polluted sediments in Tierra del Fuego: Site OR sample ARG 05_12.3m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1275
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location
Location Name	Ushuaia Bay, Tierra del Fuego, Argentina
Coordinates	Lat. (^o)	-54.810872	Long. (^o)	-68.295525	Alt. (m)		Depth (m)	12.3
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F056896	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
TDF_OR_ARG05_123mDRAFT_10276744	F056896	GGA	LLTXXIKMWSNCCGAEASYLSDEICGDCLEHAVFDDEDEDMGDTCRNGKEWNKCNCC*

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