Scaffold TDF_OR_ARG05_123mDRAFT_1011789

Overview

Basic Information

• Taxon OID: 3300000242
• Scaffold ID: TDF_OR_ARG05_123mDRAFT_1011789
• Source Dataset Name: Marine microbial communities from chronically polluted sediments in Tierra del Fuego: Site OR sample ARG 05_12.3m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2258
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location

• Location Name: Ushuaia Bay, Tierra del Fuego, Argentina
• Coordinates
  • Lat. (^o): -54.810872
  • Long. (^o): -68.295525
  • Depth (m): 12.3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041207	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
TDF_OR_ARG05_123mDRAFT_10117893	F041207	GGGGG	MLEAVRQEELDRIDTLRLIEAAAYANRLSSQLKRNDCTDEERKNGLKLLERLIERVRFLKIALEPAF*