NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold TDF_OR_ARG05_123mDRAFT_1004804

Scaffold TDF_OR_ARG05_123mDRAFT_1004804


Overview

Basic Information
Taxon OID3300000242 Open in IMG/M
Scaffold IDTDF_OR_ARG05_123mDRAFT_1004804 Open in IMG/M
Source Dataset NameMarine microbial communities from chronically polluted sediments in Tierra del Fuego: Site OR sample ARG 05_12.3m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3758
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location
Location NameUshuaia Bay, Tierra del Fuego, Argentina
CoordinatesLat. (o)-54.810872Long. (o)-68.295525Alt. (m)Depth (m)12.3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F105202Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
TDF_OR_ARG05_123mDRAFT_10048045F105202GGAGMNRNSITSKTHLLWVVMAVVLGCANTPEPSPPVVYVPSISTLQPEEYPGEIDKYNKLIQSDLHLVIQQRAHLNLASLYFSPMNPNRDXKLALKHLETYAFFDPDFVNAVDPRLLLAAIIEIERFSAIADAQSKAIRALNQEVEILKIQAMVSKGSRQNTHKENLKLKKRIGRLKRQIRNLETSNAQLNKTIEMLSTLDTRLEEKRSNFNKIDSGQEE*

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