Scaffold BS_KBA_SWE21_205mDRAFT_10073231

Overview

Basic Information

• Taxon OID: 3300000241
• Scaffold ID: BS_KBA_SWE21_205mDRAFT_10073231
• Source Dataset Name: Marine microbial communities from chronically polluted sediments in the Baltic Sea - site KBB sample SWE 21_20.5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 761
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Wetlands → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location

• Location Name: KBB site, Vaertahamnen, Baltic Sea, Sweden
• Coordinates
  • Lat. (^o): 59.350163
  • Long. (^o): 18.107847
  • Depth (m): 20.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F074791	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
BS_KBA_SWE21_205mDRAFT_100732313	F074791	GAGG	MSIDTYGLPSEQYEEFFEDNVAFSAKLYVKACQILKDNGAGAIDFKTTLDLYQEAVYQTNDDCRRYQKANNPEAIKDNDLFGLSPSREELM