Scaffold BS_KBA_SWE21_205mDRAFT_10002708

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold BS_KBA_SWE21_205mDRAFT_10002708

Scaffold BS_KBA_SWE21_205mDRAFT_10002708

Overview

Basic Information
Taxon OID	3300000241 Open in IMG/M
Scaffold ID	BS_KBA_SWE21_205mDRAFT_10002708 Open in IMG/M
Source Dataset Name	Marine microbial communities from chronically polluted sediments in the Baltic Sea - site KBB sample SWE 21_20.5m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	5781
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location
Location Name	KBB site, Vaertahamnen, Baltic Sea, Sweden
Coordinates	Lat. (^o)	59.350163	Long. (^o)	18.107847	Alt. (m)		Depth (m)	20.5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080977	Metagenome	114	N
F099280	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
BS_KBA_SWE21_205mDRAFT_100027085	F099280	AGGA	MAKQPTEAVMPEPAMGMDLPEDMSGIPSPMAEEGAVTISVXKSKFDEXHSIAMQLAGVXDALAAXVEGQXAXTESLEGXAPAAENAAMASEEDFLNSIASEGSIR*
BS_KBA_SWE21_205mDRAFT_100027086	F080977	N/A	MFVDQIFEECAEILGTTDEKRVYRKITQAVQTLMESGHWMQSTADVDVCTGWDGCTIALPRGIDVPLAVNVDGSPVYFRNRLFQYHVNKGGKFNTVEWAWDDRGYVATLMQIIQPSQLVAIAESENDVGKIIRVTGTDSNNRDIRSQLKDGTGVDGLLIPIHSQSDFAYGTIAPDDATIRTREVVISPISKFASTTPHTLNSGQGMTITAISGTIPVPL

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.