NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SI36aug09_120mDRAFT_1002910

Scaffold SI36aug09_120mDRAFT_1002910


Overview

Basic Information
Taxon OID3300000239 Open in IMG/M
Scaffold IDSI36aug09_120mDRAFT_1002910 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 36 08/11/09 120m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)5910
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (15.38%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet 36, Vancouver Island, BC, Canada
CoordinatesLat. (o)48.5663346Long. (o)-123.5193257Alt. (m)Depth (m)120
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072848Metagenome / Metatranscriptome121Y
F092871Metagenome107N
F096496Metagenome104N

Sequences

Protein IDFamilyRBSSequence
SI36aug09_120mDRAFT_100291012F072848N/AMTNLINNDKIEVGFNELDTAMXKIVNEHKLNFYEVLSILAMMDTKVKQNNISQYLLETVTKFQELLNKEDQDGR*
SI36aug09_120mDRAFT_100291013F092871N/AAKDIVKITNIPKGTIYRIVDQLREEAKTNFDQLMTKDYLYKYQMNXDNYSKTIVQCNIEIETVNKKYDELEKVVMESLEVCPVDKYIARSAYMTNLINIRNNRTIEIQKLIAQRDKSSEMKAKIFNSGPVVYRINQVVENKVLQPEMLNEQEPRIELVNNTEKVEEIVQDNAISEEDLQVLKEMEENS*
SI36aug09_120mDRAFT_10029108F096496AGGMKLVPTNIERNAILTKQQKIHLKSKTVDPKILNNIKRTLDKKLDGLTEDLDIIANSNHLESWRSLQSEKFQELHEILESTVMNFKPAYQYSVKTFSRKVGKKKFRMFWMDRSEESNFSTERIFEPSFALRKIKHYLNDDSFELLCWAVENNLIPCYKNNAKRELYFLKLQNIRDFTNEKKVRLKPEIEKENSVLDNKNS*
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