Scaffold SI36aug09_100mDRAFT_1017725

Overview

Basic Information

• Taxon OID: 3300000238
• Scaffold ID: SI36aug09_100mDRAFT_1017725
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 36 08/11/09 100m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 964
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium TMED228 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet 36, Vancouver Island, BC, Canada
• Coordinates
  • Lat. (^o): 48.5663346
  • Long. (^o): -123.5193257
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025387	Metagenome / Metatranscriptome	202	Y
F089160	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
SI36aug09_100mDRAFT_10177251	F025387	GGA	MTKRVEQLGEMIVRAITYPIRATIGVCQCIHKSTPDTLDDCMPFEIKKKEDKDGQNYQLN
SI36aug09_100mDRAFT_10177254	F089160	N/A	KKYFLKVIHLPILYPKRGYIQIVKIYRDKKPSIRVVTIPTSSDKRELLVLNKIYGGNNG*