Scaffold TB_LI09_3DRAFT_1000007

Overview

Basic Information

• Taxon OID: 3300000229
• Scaffold ID: TB_LI09_3DRAFT_1000007
• Source Dataset Name: Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- LI09_3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 28021
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (23.81%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Cave Water → Groundwater → Groundwater Microbial Communities From Subsurface Biofilms In Sulfidic Aquifier In Frasassi Gorge, Italy

Source Dataset Sampling Location

• Location Name: Lago Infinito, wall in 7.1 m depth, Frasassi Caves, Italy
• Coordinates
  • Lat. (^o): 43.383333
  • Long. (^o): 12.95
  • Depth (m): 7.1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001883	Metagenome / Metatranscriptome	622	Y
F004366	Metagenome / Metatranscriptome	441	Y
F010620	Metagenome	301	Y
F010918	Metagenome / Metatranscriptome	297	Y
F013186	Metagenome / Metatranscriptome	273	N
F019139	Metagenome / Metatranscriptome	231	Y
F037224	Metagenome	168	Y
F072337	Metagenome / Metatranscriptome	121	N
F094950	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
TB_LI09_3DRAFT_100000722	F072337	N/A	MKKYRVWLEDNVEPEGGSWWECYLGKDGNLHDFIYTDEQVDTPQWYIDNGYIVEEL*
TB_LI09_3DRAFT_100000723	F010918	N/A	MNRYKVTYNYFENGKKRIAIRILEAIDRDHAIMKMAMWPKLILKVEQYEKI*
TB_LI09_3DRAFT_100000728	F010620	N/A	MKKLIVFLSVLTMFGCSSERMAQYHYKKALKHGLKLITDSDTIKIQTIDSIPVIINDTIIWEKVITTKDSVIFFKNIYIPKTRWQTRIEYRYKTQLVKQDVLKYKYIYKEAKIQKSKTNWMLFLYGAIAGIVVLFVLKFLYKLYNPFK*
TB_LI09_3DRAFT_100000737	F094950	N/A	MVTILGREIPNKIEELTIEQFEAITDINNNKEIDPVDRHLQIFEYLGIPEKEFFDFDIADFIDIVKEFNTTPELTNSMEPVGTLELDGFTYTAELKLTVRETKLIEKIAIHKQKGYISDMMAVMFKADHLTNAEHYTEAHLKLKSKHIRKLKAELCIPYIMFVANKVKKQVENVPTEAVE
TB_LI09_3DRAFT_100000739	F001883	AGTAG	MGRYANTGEFNVLYPTRRRMATILKRILRDDIVDGEGTLVESIRINAKITGFEKLEIQIIAMYYFIFLNNGAFLWNGGVITPRDYVAQFTEELNSAGITAEIYSQYTEWLSKRFPILEVVEVLEKNQRIVYTFEATDPPAGFTPGFPLDV*
TB_LI09_3DRAFT_10000074	F037224	AGGAG	MTLTMHSDTIHKIQVVQAYIHHKTGKRVEIVFNNPSRMQQHLMMLDHAYMVAMGGFKNNNSNGANIGKDK*
TB_LI09_3DRAFT_100000741	F004366	AGCAG	MNSLQAITNHIIAFYTAHKQVFKVGSDFKEQLYNFATQDEKYPLVYIVPSGVIPTENTTEFNFDIYCYDIIQKDRANIITILSDTQQILNDLYIYYMDSTDYSFDVVGVPTFTPLNNDLLDYAAGYQMSITLTVNDWTDCAVPI*
TB_LI09_3DRAFT_10000077	F019139	N/A	MKIKTEHLGKYITMYNGNFETSFTVTEETAKDHKYYTSKGLGYLFEESTPKAKYKGVENEEK*
TB_LI09_3DRAFT_10000079	F013186	AGGA	MKKLLDQYISRAYPEVRAYTAYFLSKMGSYIDADTVINNSYIHVLTINDYVADEDKVKSYLLNTIKYQILWSTSKSHKDDRITAIIDNSPDRIEDDELVDKIREDKIYSFNKGLIEIYRSEIKDQVQKIVFEAYIDKGYTTSRSLAIYFGITHTSAYYLIKELKQNLNKLQYRYETEPSY