NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold TB_PC08_66DRAFT_10000281

Scaffold TB_PC08_66DRAFT_10000281


Overview

Basic Information
Taxon OID3300000228 Open in IMG/M
Scaffold IDTB_PC08_66DRAFT_10000281 Open in IMG/M
Source Dataset NameGroundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- PC08_66
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)24657
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (10.87%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Cave Water → Groundwater → Groundwater Microbial Communities From Subsurface Biofilms In Sulfidic Aquifier In Frasassi Gorge, Italy

Source Dataset Sampling Location
Location NamePozzo dei Cristalli, Frasassi Caves, Italy
CoordinatesLat. (o)43.383333Long. (o)12.95Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015419Metagenome / Metatranscriptome255Y

Sequences

Protein IDFamilyRBSSequence
TB_PC08_66DRAFT_1000028122F015419N/AMEYKVQITDEDGNVQQYVVSRSSSSEHKSLNDFILEALRISEEKRKLPLKTQCPNGLEVYPSIKMKFENYGCAILGDKLEAMHITWRE*

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