Scaffold SI34jun09_135mDRAFT_1016146

Overview

Basic Information

• Taxon OID: 3300000226
• Scaffold ID: SI34jun09_135mDRAFT_1016146
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 34 06/16/09 135m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2357
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet 34, Vancouver Island, BC, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036653	Metagenome / Metatranscriptome	169	Y
F045801	Metagenome / Metatranscriptome	152	N
F073426	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
SI34jun09_135mDRAFT_10161461	F045801	GGAG	MFWIEIILSIWALIAIRLLAQGHKLGPLVGWVGQILWVSMWIFTEQYGFILIDTGLAYIYLE
SI34jun09_135mDRAFT_10161464	F036653	GGAG	MTVILVTVGIVLSMFVYEPLWFDTRMHYYHNTYQSNKACNHAAIQVVEKTTGRVCVPKDNHSGQVDLYLTKE*
SI34jun09_135mDRAFT_10161465	F073426	GGGGG	MTRLYIVLVLTVFLALFYFSYRAPVLVSVPKVEKAINMGIWSESNQGNSLAEK*