Scaffold SI34jun09_120mDRAFT_1031022

Overview

Basic Information

• Taxon OID: 3300000225
• Scaffold ID: SI34jun09_120mDRAFT_1031022
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 34 06/16/09 120m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1261
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet 34, Vancouver Island, BC, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037425	Metagenome / Metatranscriptome	168	Y
F039346	Metagenome / Metatranscriptome	164	Y
F044731	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
SI34jun09_120mDRAFT_10310222	F044731	GAG	MMTLEDIYREYERLTLELCTQEDDNTLECAGAMMGQAMKLYKLALSPEDFDALMHIISQASNLDTVGWEDDTSSETIH*
SI34jun09_120mDRAFT_10310223	F037425	GGAG	MKTSTVNPHFKWNGFREQYMGIIQNLVNNIDICNRRYAEEGDEGYLAARKKYIEEVEELKTFIVKKEKELGYYGDEQ*
SI34jun09_120mDRAFT_10310224	F039346	GGAG	MITSFVITLIECLEIAFITLLLVQTNTRKRDNEKHLRQHLQVLPHVQIVTYGVLGLIGGLLSAYYLHDMLENYEWLMYAILSSLFFYLFIKNKEIVAHIKEHVDEISNSNSTVLFLAAFFIYGRESFEIFSNLFLNPNSSWSAAICAALVAFCIYMFARDSKVKVYIFKFGYWAYLAFGIWFGYEALEHLHII*