NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SI34jun09_120mDRAFT_1000973

Scaffold SI34jun09_120mDRAFT_1000973


Overview

Basic Information
Taxon OID3300000225 Open in IMG/M
Scaffold IDSI34jun09_120mDRAFT_1000973 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 34 06/16/09 120m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)12376
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet 34, Vancouver Island, BC, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)120
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037425Metagenome / Metatranscriptome168Y
F044731Metagenome / Metatranscriptome154Y
F086193Metagenome111N

Sequences

Protein IDFamilyRBSSequence
SI34jun09_120mDRAFT_100097312F044731GAGMTLEEVYRKYEKLTLEICTGETSHDNTLECAGAMMGQAMKLYKLALSPEDFDALMHIISQSGIDAPEFDDYPSGTLH*
SI34jun09_120mDRAFT_100097313F037425GGAMKTSTVDPHYKWDGFRKQYMGIIQNLINNIDICNRRFVEEGEEGYLVQRDVYIKEVEELKTFIVKKEKELGLYKE*
SI34jun09_120mDRAFT_100097319F086193N/AMLKQKQKPLSDDQIFLSSSTEQITWGELHANLDAKIERLRDHGIGPHVVFVVAEKQVTIDDYLWILASIKNGGSATQADGRQSKMELDGLVKGCKATCIIRSNEITMLDDPAETGPTILHPLEIYRGMTSGTTVKEFFEMYPFFWDYEDHEEAIVDGETLLGCTAHASTQHLFAIAPEFEQDERPYILCTHGFTATYNPYNLLRMYYVGGGLHFLNYGDNIPEQIQKANPNCCISYPIAVKNIVAACPDDFNWTGIKYWEVSGGHTPESVVRNIEEKFNFTAMYNMMASTEADCHSRAEYRPGDPLEKFYGFVHDPAFYNGELKYDEDGVLWYKYGTRDWQTDGDKFEERDGAWFYKGRAFDDVIFMKGGVKIYTGMIEAKALETSGVENVASCSKDELHYLIYTGDALAYDIASSFKEMQPSKRPHDIYRVTDKGFFGQTDDTRTPQKLQKSKLADIILSNPSEIIEHCSLKGHQEV*
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