Scaffold SI34jun09_10mDRAFT_1009589

Overview

Basic Information

• Taxon OID: 3300000224
• Scaffold ID: SI34jun09_10mDRAFT_1009589
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 34 06/16/09 10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1999
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet 34, Vancouver Island, BC, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043629	Metagenome	156	Y
F092731	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
SI34jun09_10mDRAFT_10095891	F092731	N/A	MSKNKLSTKATEVYNTLLELNWSEPYLTIEHIQSATGLGRSKLAPTLAELIGASKVLHGNEEALGELIETFTPKVKGVAYGYPLDYYTFDEWIGHKLELQEDK*
SI34jun09_10mDRAFT_10095894	F043629	GGA	MANSTINITVDVLDVDVMLEIEVIWHMSVAGEMTIDDFYGYHFDIKTGEYTRIPEWLHKIIETTQLLEEEYTDLIDLNCDENTY*