Scaffold SI34jun09_10mDRAFT_1006827

Overview

Basic Information

• Taxon OID: 3300000224
• Scaffold ID: SI34jun09_10mDRAFT_1006827
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 34 06/16/09 10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2607
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet 34, Vancouver Island, BC, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005287	Metagenome / Metatranscriptome	406	Y
F025258	Metagenome / Metatranscriptome	202	Y
F102786	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
SI34jun09_10mDRAFT_10068271	F005287	N/A	MVHELASGRRIIKIKSTDIVYSEHDYDECFEYVDGSGRVPDGTAVGYEINSNAPTRVLILFEDICYSQYDHDYWNNYELEHDVDRIVIG*
SI34jun09_10mDRAFT_100682710	F025258	N/A	MSEYKPKPFTKELAEQMKVAMNESFDEKRTLCNVLKLAYRCSREESYNLQAVQALLLESLWMGQRMHSKLYDAQKQEFNNEHQQQNEDEDPFAVDWSNLDGRNVAQGNWD*
SI34jun09_10mDRAFT_10068279	F102786	N/A	MLKGKERQIVLDCLYQESLKEAKKHTVFEVKAKMTAKLEAQLKYEHISSRERIQIYYNFICKKITKYIADDINKSATMYWVNGTPEKRNKRIAEYAHYAFARMPENQKIAICEKLGFKYLSN*