Scaffold SI34jun09_10mDRAFT_1005788

Overview

Basic Information

• Taxon OID: 3300000224
• Scaffold ID: SI34jun09_10mDRAFT_1005788
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 34 06/16/09 10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2955
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet 34, Vancouver Island, BC, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029108	Metagenome / Metatranscriptome	189	Y
F034927	Metagenome	173	Y
F040577	Metagenome / Metatranscriptome	161	Y
F068602	Metagenome / Metatranscriptome	124	Y
F072343	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
SI34jun09_10mDRAFT_100578812	F034927	N/A	MKLDIFKLPEQWTDAEIEHLYDTNWNITLEQLSLLTNKTIQQLKILLLPN*
SI34jun09_10mDRAFT_10057883	F040577	N/A	MTELQRISVEIVEIFQNKISKLTKDQAEQLNIHNNSMNFYVKLGDQEKALWEAKHTLEYLEEITK*
SI34jun09_10mDRAFT_10057884	F068602	AGGAG	MEDDDPHAEEMLEKSLFIVETLAKDIHLYSDEQIQDVMMMQESMEFQLKQNNTNKSIIECRNLYNYISEITK*
SI34jun09_10mDRAFT_10057885	F072343	N/A	MHTRREIDHILDDINKIIAKNKTSNKEKEDDKAMLEHLYATINLKTDNGKRAKGMWTESPEFINN*
SI34jun09_10mDRAFT_10057889	F029108	N/A	MNQINPKKYIVGKKKSGRGKVGAKGGVATRTGAFGGKSKFNKKRLDNKS*