Scaffold SI34jun09_10mDRAFT_1004507

Overview

Basic Information

• Taxon OID: 3300000224
• Scaffold ID: SI34jun09_10mDRAFT_1004507
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 34 06/16/09 10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3586
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bacteriovoracales → Bacteriovoracaceae → Bacteriovorax → unclassified Bacteriovorax → Bacteriovorax sp. MedPE-SWde (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet 34, Vancouver Island, BC, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042906	Metagenome / Metatranscriptome	157	Y
F052547	Metagenome / Metatranscriptome	142	N
F080057	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
SI34jun09_10mDRAFT_10045071	F042906	AGGAG	MPIIKNNLYYELTTETQTKPVSAVKIQLDVLDGCHHKCPGCFVHRRGNASDAHQLDSAKEFIRNITDKGILVDEMLIGPTDFLASENFYEVMPHLVDIVNENSPILAFVSTLIDGDIPRFCEFLKDNINLDTEIEIGIATNPHKFMSIDYMADMQNKLRYLDEHIKHEITYTFVVNIKDYGLDYAALHEHAVKTFDTILDFIPSVSRSHKANIILETLDKFNEYFNVLTRDSTMNNIMVDHSHAGMNYTVLNYKRGEWYLSPFMYENMAIYHDMFKVQTFEDAVTITESQIDRAKNTECESCPMFFSCYNRKIILLRDYLGVDRCIAPKENMINNIHNYNAPAQEMYDWDGYSVDADKKGYRKKFLVTEDGDERLDRIKDISYVK*
SI34jun09_10mDRAFT_10045072	F080057	AGGA	MLNDEWKSIVIDGKKLEEFSAISSMGTYKIQVNLEILEGCSYMCPGCFVKRRGNWNPKSINLFHSLAYELKDRTDIVLDDIVIGPTDFYGAENLEEIINNPRLADAILMMPEDNRNVQHNCSILGSLSEEDIDSKIKAIENSPLGKAVEAWDVQIALDLNRLMTDIIYMEALDRRIETFKNSSLNFEISMATNIVQGVEEILFAAIDFVRTKYQTVIEVLPSVVRSFNHSAKHGDKLFEWNDMLTRLSVDQNRFKNKFHFLQGDVSHKAFHYSVVSLYQGDMYMSPFIYENAQIHIDDFKVPVNGSLVDSILNKKNEVVNSQIENSSDKECGSCKYLNICANRMVPMIMDTVFDGRKECILNKDVISLYDDEVYSGNSY*
SI34jun09_10mDRAFT_10045073	F052547	GAGG	VGIVTNNKAAAQADKDFNLSFNEGHEIKVQFNCEVLAGCEFRCPGCFVNKKGTNIGSFERLHNAIDLFNTNGYRVSTINIGPTDLFGNNNILDLLKDEVFRECLSKVTTIQFVTTLNHISYEVIDLLNSIPKAPGFMYDCNIALVPPVNWTAIEDKLDLLNYFKDDLNYYMVHNMGNNDLYNDMVVDMAKVADERFDTILQLNPSFFRAPKSSLQKHLINKWKSYDFSDDLYPKTIVDKAQGGSLELNYTYCNERFFWTPFIYDTALIGTEEFEVKDENDIESWTGTKENQFMKQLTYSAQTDNCSGCPNMMTCIDKGVLSYMEHHSILECVFPGVISANKG*