Scaffold LPjun09P410mDRAFT_1002778

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold LPjun09P410mDRAFT_1002778

Scaffold LPjun09P410mDRAFT_1002778

Overview

Basic Information
Taxon OID	3300000223 Open in IMG/M
Scaffold ID	LPjun09P410mDRAFT_1002778 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2009 P4 10m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1756
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	P4, Pacific Ocean
Coordinates	Lat. (^o)	48.65	Long. (^o)	-126.666667	Alt. (m)		Depth (m)	10
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F086723	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
LPjun09P410mDRAFT_10027783	F086723	N/A	MDLIFENKQRNIKAYKCYNVIQKTNNIGNILLNGLIHWDTISDEEVQNIKTIITNNSIGFKGYTISDAIVMQNDTKDMHYYAYFNENNIELWYITGVYDMVMCDGLKFNDLLFFLQA*

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