Scaffold LPjun09P12500mDRAFT_1006861

Overview

Basic Information

• Taxon OID: 3300000222
• Scaffold ID: LPjun09P12500mDRAFT_1006861
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2009 P12 500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2704
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: P12, Pacific Ocean
• Coordinates
  • Lat. (^o): 48.97
  • Long. (^o): -130.666667
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027201	Metagenome / Metatranscriptome	195	Y
F054103	Metagenome / Metatranscriptome	140	Y
F064802	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
LPjun09P12500mDRAFT_10068612	F064802	N/A	MQQHVLQMSVKHMKTEESIRDLILFTKEKLLHENVDPTGMLPQTLIPPQLIDIPDDERRGVIKALRWVIADEDIFQRE*
LPjun09P12500mDRAFT_10068613	F054103	N/A	MKIYFNANNKATLEALEGCGVKNVLLSHRYSYANINKFKSKFDSIFIVPGTKGNPDKYHEFLKKKREYYDYATQFDVFYNMDETLKYLKKEREDGIDWTLPILQENYLQHISRLRPKTGDYICIGEVHGKLETEDQIRKLPQNVEYHGLAKGKYIEKRPFKSLDTSGWISAAMSKKTEVWSGNSTFSLFFGEKGRGMKAQVASTLERFSDYLETVGISSKSVLENDYYSLLKLPIAVLYMPMCKSLGIYDINFK*
LPjun09P12500mDRAFT_10068614	F027201	AGGA	MINILDTRNPEDLKSMMDMLAKLSFENVLMALTQAKMDGNIPDRNTKSEVNTLLSIVKSINDLNSKIVVTEKTEYRQGDIENIFRQIKAQRTG*