NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SI53jan11_150mDRAFT_c1027758

Scaffold SI53jan11_150mDRAFT_c1027758


Overview

Basic Information
Taxon OID3300000216 Open in IMG/M
Scaffold IDSI53jan11_150mDRAFT_c1027758 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 53 01/11/11 150m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1187
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet 53, Vancouver Island, BC, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)150
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003975Metagenome459Y

Sequences

Protein IDFamilyRBSSequence
SI53jan11_150mDRAFT_10277583F003975AGGAGMIKLKDLLKEWTDTSFRDLPKRWSKPVMKGRESDGLTEFERMGGTDVELGKLYTAKDRPAFKVESTIDEKMSDDKKAFLMLRIYGDSWKVNLGKVFSGINKGKPTMIKKGLKEIKILNKKIEEMIEELI*

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