Scaffold SI53jan11_120mDRAFT_c1004274

Overview

Basic Information

• Taxon OID: 3300000215
• Scaffold ID: SI53jan11_120mDRAFT_c1004274
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 53 01/11/11 120m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4625
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet 53, Vancouver Island, BC, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061392	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
SI53jan11_120mDRAFT_10042746	F061392	AGGAG	VVVKRLSMICAFFAVGIFLSLQTFAGESDKPDPTFRLNATLYPIDGGQLYIGDVNKDKKTFRLHLRHIGKDGKWVYYYASASAPVNEDGDVEADSAVASIEYPQYIASVIGNTFRKARVRVLFSHRGDGEGFFKEAGQVIFQECATKTFEAKNWNCTGWEYLGTLPGFQ*