Scaffold LowMDraftT1_c088438

Overview

Basic Information

• Taxon OID: 3300000210
• Scaffold ID: LowMDraftT1_c088438
• Source Dataset Name: Sheep rumen microbial communities from New Zealand - Low methane emitting sheep
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1815
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Oribacterium → unclassified Oribacterium → Oribacterium sp. oral taxon 078 → Oribacterium sp. oral taxon 078 str. F0263 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Sheep Rumen → Sheep Rumen Microbial Communities From New Zealand From High And Low Methane Emitting Sheep

Source Dataset Sampling Location

• Location Name: Hamilton, New Zealand
• Coordinates
  • Lat. (^o): -45.483333
  • Long. (^o): 170.716667

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056215	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
LowMDraftT1_0884381	F056215	N/A	YALEACPKRLVKLEPDDQNETIDLVKYYQYQGHECKYSIGYFYYNSHEPCWELKFVGGRFKELLETDVVAVFKMLKAAYDTLEEWSLRGEEE*