Scaffold M3P_c10005560

Overview

Basic Information

• Taxon OID: 3300000206
• Scaffold ID: M3P_c10005560
• Source Dataset Name: Lotic microbial communities from Mississippi River at two locations in the state of Minnesota, sample from River Site 1, Mississippi Headwaters
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1495
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Lotic → Lotic Microbial Communities From Mississippi River At Two Locations In The State Of Minnesota

Source Dataset Sampling Location

• Location Name: USA: Solway, Minnesota
• Coordinates
  • Lat. (^o): 47.349634
  • Long. (^o): -95.182806
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053301	Metagenome / Metatranscriptome	141	N
F054860	Metagenome	139	N
F100477	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
M3P_100055602	F054860	AGAAG	LNISLKNTRINYHNSEETVAFNALLCNEKIPFAEVSNDGRGGENRYRPLGDSMDWIFNHALVTAFREWCSNQPPVYDKESGNTYNFSADLYVNDCLIQETGSQQELVVSL*
M3P_100055604	F053301	GGAGG	MTVREVIDLLESIAQKEGDQTECIVEIEEENYNTEAEIHTVCTNGYQDGTKKICLLGTKDIEADEE*
M3P_100055605	F100477	N/A	MMKSIQLSSIKKKIGAENFSVLRETILKSSLDNPCKGMTLQRDRVVNSIKDPQIKKSLENLTSKVDWLVVDVV*