Scaffold TB18AUG2009E_c003100

Overview

Basic Information

• Taxon OID: 3300000203
• Scaffold ID: TB18AUG2009E_c003100
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2614
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6864

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029335	Metagenome / Metatranscriptome	188	Y
F036063	Metagenome	170	Y
F091089	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
TB18AUG2009E_0031005	F036063	N/A	MLVLKTTQDYINFSTTQWGVNFPITAENLQFNTLDIQHNINALVAFNKDNNVQNLHDSIMQQDTFVREYYIAMLEYIEQNALIPANMFCCV*
TB18AUG2009E_0031006	F091089	AGGAG	MYNTLAKAKLVFNKRLQSYKLVVAFNVHTTTREDKDGNTKIVHLFPVQSKCAYVSGDLPKSNIKNELARALKCASAVARTDNILIVG*
TB18AUG2009E_0031008	F029335	AGGAG	MRTITTQNNGNIYQMDITEAIEIVQDYARLNTGGDLLQATEEMMQLADANDLPIRQKIGIRRFVRDMSQLLAPVDA*