Scaffold TB18AUG2009E_c000110

Overview

Basic Information

• Taxon OID: 3300000203
• Scaffold ID: TB18AUG2009E_c000110
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18727
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (65.85%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6864

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007166	Metagenome / Metatranscriptome	356	Y
F010592	Metagenome	301	Y
F068376	Metagenome	124	N
F069612	Metagenome	123	N
F070807	Metagenome	122	N
F074308	Metagenome	119	N
F078045	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
TB18AUG2009E_00011012	F069612	AGGA	MTCRVCKFFVFNQNDMMGACKLNPVVVNKMPQDWCGQEIPKEYEEPGITITVAPKATTVAQETTYDINTDEVKPKRGRKNAGTKE*
TB18AUG2009E_00011016	F007166	GGA	MDELYQVMTEMEQRLEIALDNMEFGTELSQDDVDVIRAACGKPNNTRNNLLQTVFEDFGNVFGGSNV*
TB18AUG2009E_00011019	F070807	GGA	MEVLIKKIKENKDGSAEVHVHYDKEGLHFLVQQGLTMTLVEAIMMDRTGTMFNVSSILKTVPKKTVVKKQQTKKK*
TB18AUG2009E_00011029	F074308	AGGA	MDSSKGIPLSTGDKLPKGADASDTSGERKVKLVGGVGMGKMDSMGSRPLSHAGNFEGKLGELNDGNMGERECYSHKRVGHDQDDM*
TB18AUG2009E_0001105	F068376	GGAG	MTNFKIEGKTHESPKGHYVKESPHKMEDEIHRLAKKLDKHIALPMEKAHHVESGSSQKEAPLPNMRKY*
TB18AUG2009E_0001106	F010592	N/A	MSTYKPFSQDLHDVYDAPARQAVSTWMQMKKGYEVRENPNRYGVDLICFRSGSPVGALEVEVRQLGFDQHRSIHVAQRKEKLFQEGLPTLFFALTQDLHRAYYLKADLIKDCPLVEVHNRYVGKGEMFYDVPITMFKIANLTDVF*
TB18AUG2009E_0001107	F078045	GGAG	MSYEHFVNNYQRWLKSPRTLSEAFKEAEYATSITRPQEPEYDLLWGFLGALLFVAVFGYGFWRYVNL*