Scaffold SI47jul10_135mDRAFT_c1020186

Overview

Basic Information

• Taxon OID: 3300000193
• Scaffold ID: SI47jul10_135mDRAFT_c1020186
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 47 07/07/10 135m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1421
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet 47, Vancouver Island, BC, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008914	Metagenome	326	Y
F073665	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
SI47jul10_135mDRAFT_10201861	F008914	N/A	KITIKIIRKNLMEREAIIEETRKWVRSWEAEQREMVLWILEEEVRHDKLMDFMHEDGGKTTPEKLN*
SI47jul10_135mDRAFT_10201864	F073665	N/A	MTSLKIIPEEKPDINKVTTCSLLDKSAMSRNVLTKEECNRVIEMGRTWEDVDAQIQTKSPKEESEKNDDYRNCKMYGPPVDDTESWLWIGQKISAAIYDFNAKEGWKFNLIGMAERPMMMEYEEGAGKYDWHIDL