Scaffold LPjun09P161000mDRAFT_c1012606

Overview

Basic Information

• Taxon OID: 3300000190
• Scaffold ID: LPjun09P161000mDRAFT_c1012606
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2009 P16 1000m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1618
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: P16, Pacific Ocean
• Coordinates
  • Lat. (^o): 49.283333
  • Long. (^o): -134.666667
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000615	Metagenome / Metatranscriptome	984	Y
F001048	Metagenome / Metatranscriptome	793	Y
F007052	Metagenome / Metatranscriptome	359	Y
F012919	Metagenome	276	Y

Sequences

Protein ID	Family	RBS	Sequence
LPjun09P161000mDRAFT_10126062	F001048	GAG	MKIKSTKQFWWRFNHLKRNGGEITVTDRTPEMDVKEFNRIESLVRKRVRWELGSEGMAVWDTCGYKDIPTLAKAYRIS*
LPjun09P161000mDRAFT_10126063	F007052	GAG	MEKNETYFVARLIKKGEFLSSEIFESLEEARLWAMKEAKLLISDLEMLRSTNVGDICVEIDKHFFGYEISSEELLKNSTRVL*
LPjun09P161000mDRAFT_10126064	F000615	N/A	VSGLERPENIMCRLRLFFECSDGSMGFAEHVMRYEDDIVGFIKHWKTGGRMVITEHIDLV
LPjun09P161000mDRAFT_10126066	F012919	GGAG	MKISRKKLNLEISKYLKNGGKITKLPDGPDYRFQPYGVRVPPGDPKVDLTISDTPTTKQQISYVEKNSL*