Scaffold TB18AUG2009H_c001676

Overview

Basic Information

• Taxon OID: 3300000177
• Scaffold ID: TB18AUG2009H_c001676
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 hypolimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3129
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6864

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013732	Metagenome / Metatranscriptome	268	Y
F059597	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
TB18AUG2009H_0016762	F059597	GAGG	VAEIVTGIPEFDKSIDSMIVRVDEAARKFVLEGAEVIXREAKNIFRTGADAKGIDSWHSNAWPVPTRRTGNLMNSIYSDGARKLGPGKWESQTGPHIVYGRRIELGFHGSGRWPYYTTRPFPYMQPGIDNSIPQLDILFQLTXNRCSGGVKCLDFFHQ*
TB18AUG2009H_0016763	F013732	AGG	MPAINLPNGQSAILFSTDEISERTNRMISRAFMKAAGSAAKLNNLGFDDSKPXTWSIFAEISDEDQANLDGYQAALIXGMVKSWSLGDLPTTESALDLPKAVFDELANACAEEYNKRPDFSPDPDPKAPTAD*