Scaffold TB18AUG2009H_c000056

Overview

Basic Information

• Taxon OID: 3300000177
• Scaffold ID: TB18AUG2009H_c000056
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 hypolimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34600
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (64.06%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6864

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019830	Metagenome	227	Y
F026563	Metagenome	197	Y
F101126	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
TB18AUG2009H_00005642	F026563	AGGTGG	MSEPVELFCTYDEDRDEWLVWFPYPLGGMNVLETFDNEAEAQEFWDDQMDGADYDA*
TB18AUG2009H_00005656	F101126	AGGA	MPKFIVELWLDGYESEEEMAAACKEFIYEQLNFSASSVTVTEIKENENDDI*
TB18AUG2009H_00005661	F019830	GGGGG	MAKKIELDGETADKITLLNLKDYRKYLKAELKTWRENPKTDSNPDGIWLHPEDVAENTRAIEALNLIIKHFGEE*