Scaffold TB03JUN2009E_c023305

Overview

Basic Information

• Taxon OID: 3300000176
• Scaffold ID: TB03JUN2009E_c023305
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 917
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6864

Associated Families

Family	Category	Number of Sequences	3D Structure?
F082065	Metagenome / Metatranscriptome	113	Y
F098538	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
TB03JUN2009E_0233052	F082065	N/A	MKKLLLIAVLLLSGCGTLSDLKDQIPSFWDGNQSVVVTDMQQIARHIDCTGDVKPQLHDLFMRVEWYDLYANTKGTKDMAKLDQVMLTTIKEFQDRVAQGPVSPMYCDMKKKILIQQADIIAKTVQGRF*
TB03JUN2009E_0233053	F098538	GGAG	MSDQLQQVAQSGDQWAAERANYAMQVHQAVGAGQLSPSEAKEILQDMINTQQLQEQANADHVKAALFFGIMELISFYA*