Basic Information | |
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Taxon OID | 3300000176 Open in IMG/M |
Scaffold ID | TB03JUN2009E_c004548 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 epilimnion |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2932 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.0412 | Long. (o) | -89.6864 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F067430 | Metagenome / Metatranscriptome | 125 | N |
F076862 | Metagenome / Metatranscriptome | 117 | N |
Protein ID | Family | RBS | Sequence |
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TB03JUN2009E_0045482 | F076862 | N/A | MSDPSRNSTVEEITKGIRTLDIENQEVENLKEIILQGVKSIGTVTELISQLVYEEDKRRSQFKDILKMVKNLLESNSHKTHTIARQYGRKHPPLTGPLARMLMDLADLEDLVSCKEIEEMKEVIEDLDNW* |
TB03JUN2009E_0045484 | F067430 | N/A | MSTSSTDQTEDNKEKLVESIEAIFGLLTLLDNYCKILKDKGKPDPSKGSIETAKESIVEMAKRIKEVLEIENTKIDLTNGKA* |
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