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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300000176 Open in IMG/M |
| Scaffold ID | TB03JUN2009E_c003374 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 epilimnion |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3525 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (30.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.0412 | Long. (o) | -89.6864 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011134 | Metagenome / Metatranscriptome | 294 | N |
| F016243 | Metagenome / Metatranscriptome | 248 | N |
| F018323 | Metagenome / Metatranscriptome | 235 | N |
| F055419 | Metagenome / Metatranscriptome | 138 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| TB03JUN2009E_0033741 | F016243 | N/A | MNEAQITKIVMRLATRSKWSIEVRRDKVSQMIAEEIQRSDELNQALMELDILLDKLQKVYQEVDDVCEHLLKHYLKSEYIQMHRPSFLNTNTIEDSKAGFIKRLLEVSDSRKSLKLQDSEITTHSIYHKIDPGLRI |
| TB03JUN2009E_00337410 | F055419 | N/A | KQKRNKSMTETLAPHERLALYNLTDEEIEKIEEELVKHFPREEFAEIHIEVWRTYEETGALQIHKLIEAKYPGNSRAGQRAITWFKIAKVLPHRVHRNVQQ* |
| TB03JUN2009E_0033747 | F011134 | N/A | MSTFAKSEENYDSKETLVDTIKTDLISQFKMCVDDINTEIIVINESNVTQYEKLNEVLINLRRLDPEWNIDSNSDKPWSFKYMLEGILRCRILEIDISDLDTLDMDGYENFHDSLRDLRIEDPGWSINNTRRDFPILLTSEDIGLMNNHLESREK* |
| TB03JUN2009E_0033749 | F018323 | GAG | MYNNKNNDEVVELIKSLEENSVDLTSAMDTVRVLDELELPLFEHILINQICKDLNAISTEINHDREDERVFRKIFHKVKVLKLKDSEWKFKQRAKKSTYSRKRMIEEERLTLSQEEARELVKFERETEIINQINIEKSFEENRHLFRLIKESRFTRVGRRTWLSFYRFPDLRKITIYNEKNFLCKVEGIRRKYSRLKWSIVL* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |