Basic Information | |
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Taxon OID | 3300000176 Open in IMG/M |
Scaffold ID | TB03JUN2009E_c001317 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 epilimnion |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6397 |
Total Scaffold Genes | 18 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (27.78%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.0412 | Long. (o) | -89.6864 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F010516 | Metagenome | 302 | Y |
F021219 | Metagenome | 219 | N |
F044876 | Metagenome | 153 | N |
F060487 | Metagenome | 132 | N |
F086514 | Metagenome | 110 | N |
F088001 | Metagenome | 109 | N |
Protein ID | Family | RBS | Sequence |
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TB03JUN2009E_00131710 | F060487 | N/A | MMKNKTPKSRIKELEAQVKHLQMIVASRELDVEILEEQINTMEHNKFLNRVKRFFSLSDTKL* |
TB03JUN2009E_00131715 | F010516 | N/A | MSQDPYAIWVPSNTGRYLLTFATLDEAYLFIIKFGGGLEVMPNTYENF* |
TB03JUN2009E_00131716 | F044876 | N/A | MKISKTCKVELIASKDATRYILNNPYLQGDKLIATNGKSLVMIPVERDSEDSDGPINVEAFKLSRKVLSAIKDSQIIANGQLKVATKEGQMTMPRRDLNGGTFPNWERVIPNENRGGKKICLNAELLYDLAQALGGNEVVLEILDETSPIVVKGHSDHAIPGSIGVLMPVKMK* |
TB03JUN2009E_0013174 | F088001 | N/A | MEEAMKPDIVKEIIQLCVFVPCFLIIAWAISDFRAYKKQLRENREWLDRYLAGKSKTNPTIKRK* |
TB03JUN2009E_0013176 | F021219 | GAGG | MKTDPTLDVTPVNVTIGSTWVDACATPFNKSVIEIVNRKGNYVQFKYTILNNRPWDTENTYSCSLDTFHVGWIHPDSEKAKANEMGLSLEDYRAFVLEQEIEELEWQRYLREKRGHDKYYEEAPV* |
TB03JUN2009E_0013177 | F086514 | N/A | VQSGIPNSNLQQESIDESIVAARLHEMDIKEYLREMGRKGGKARAAKLTPEEKTRIALQGVFMKQYLKNLKKKST* |
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