Scaffold TB03JUN2009E

Basic Information
Taxon OID	3300000176 Open in IMG/M
Scaffold ID	TB03JUN2009E_c000206 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300000176 Open in IMG/M

Scaffold ID

TB03JUN2009E_c000206 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 epilimnion

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18417
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (47.83%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

18417

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (47.83%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.0412	Long. (^o)	-89.6864	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Trout Bog, Vilas County, Wisconsin, USA

Coordinates

Lat. (^o)

46.0412

Long. (^o)

-89.6864

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004256	Metagenome	446	Y
F024484	Metagenome / Metatranscriptome	205	Y
F029568	Metagenome / Metatranscriptome	188	Y
F043882	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
TB03JUN2009E_00020611	F024484	N/A	MLTPTNYTVDTSLFQEARHHLPKDEMRTTINRPTGNFFYDPWVIKDEYKGTVWETLYNSLPVTKGEARIIILDPKQCYQIHADIDDRYHLNILGDNSYLIDLVRDTMYPLVQDGIWYDMDASFLHTAANFGRKARVQLVVRKLLKKNKLKNPIEVSLATSMDNSNHARFLFDNTMSPWFNDANKAGFINSFTQGYVSITFNIEQDKLASLKNILPEEFKIN*
TB03JUN2009E_00020616	F004256	N/A	MNYKYYYNHVPGEQPSRNNLIYTSLISEDEKTFVQWYYNDTEYHKGQNEVIDPAKMEEKWIREVNYLTQMRNAYPELVPTIINIDLKSRKLYLEIDGPDFWNRAECNVANYDKVLPDWQAQMLTIIRAHKQLGLYKYSMHPSSYFVVNGQLKSINYFFTYREHEGPITIADHASHIYSTRQDTMRKQVEQMGISWDKPESLDKLQMLCFESFRSNYPDDFIEKAKAIYD*
TB03JUN2009E_00020620	F029568	N/A	MNNRYDLADTHIVIYFKSLPKFEEARELCLQEDNWLRHNYIRENLVVEQHTGYGVVYQTSTGKPMVMGGVFRDDRYPKNVAKMINRLYTFPEFRMKPTDMTDGFRVTCSLISALEKVNNYDLYLITMQNRNRGGKRWWDTWVNQMAIASNNKWTLGDGYIQTCAWPVQKCWQNFVYYETVPGAFAKWNTTLINDAEWNQLEEGK*
TB03JUN2009E_00020622	F043882	N/A	MGTFYISSPELAYVHVPRTGMAMKKIISDWLKPNFNLNDTDEWMINHPSLEMVREHIPGGKTLSVVRNPWQRVYSFYRKISTEGYWLDWNGKTLLDLKPINEWVADYCNPDVPFEFPRWFNKTTNQIDFLNYNGNWVDFIIKAEELETGFIPVKEYLGCNKPLPDLTGYDHWEFKKYFNDDSIKHIARVHERDIDFFKYSI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold TB03JUN2009E_c000206

Overview

Ecosystem & Geography

Associated Families

Sequences