Basic Information | |
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Taxon OID | 3300000176 Open in IMG/M |
Scaffold ID | TB03JUN2009E_c000034 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 epilimnion |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 45537 |
Total Scaffold Genes | 67 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 52 (77.61%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.0412 | Long. (o) | -89.6864 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F009735 | Metagenome / Metatranscriptome | 313 | Y |
F017289 | Metagenome / Metatranscriptome | 241 | Y |
F017814 | Metagenome / Metatranscriptome | 238 | Y |
F020318 | Metagenome / Metatranscriptome | 224 | Y |
F098365 | Metagenome | 103 | Y |
Protein ID | Family | RBS | Sequence |
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TB03JUN2009E_00003440 | F017289 | GGA | MKTKEEIKEEIIELYGAMQALSDAMNLLHAQRMEKSKQMMALSHMLKEMEDKND* |
TB03JUN2009E_00003442 | F098365 | GGA | MTDTIFHITTKPNIKFRLGKDSTITFHSYSPKPPNAFQRWMLKILLGIYMELIND* |
TB03JUN2009E_00003448 | F009735 | N/A | MSMMTGIVEALTTKDVNTKFGTKPTYSMKVSGTWIKCGFKDPKVEVGYEVEFDGVSGTYGVETKAVNVLSKGSGTPTPAATGTSVAAPKASYGGYKDKVFPIPALHGDRAIIRQNALARATDLYIAARGGKPFELEEGNLDFVVRLARKFEAYTAGDLDLAQAMAENNEEGKQE* |
TB03JUN2009E_0000346 | F020318 | AGGAG | MEAVSPGNFEEWKQHPVTKRLMKMLTNDREMMKEGLVNNSYDDQEEVKGRCRAIAIILNIEYEDLYESKETREVINEQ* |
TB03JUN2009E_00003466 | F017814 | AGGAG | MSQQSNFDFNTFNNLVEHKPAGLQIFLAQQLLSNALWSMEKYDNPREVDVRTIFNEIKELRIKLKADAESRK* |
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