Scaffold SI39nov09_120mDRAFT_c1041486

Overview

Basic Information

• Taxon OID: 3300000167
• Scaffold ID: SI39nov09_120mDRAFT_c1041486
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 39 11/10/09 120m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 996
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet 39, Vancouver Island, BC, Canada
• Coordinates
  • Lat. (^o): 48.35
  • Long. (^o): -123.29
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000464	Metagenome / Metatranscriptome	1105	Y
F010001	Metagenome / Metatranscriptome	310	Y

Sequences

Protein ID	Family	RBS	Sequence
SI39nov09_120mDRAFT_10414863	F010001	GAG	MQDKASKDEVKLLRAQLGNLEVQVADYQQIVKELSDKLSLYEKKYGTVFRSTRNISTQK*
SI39nov09_120mDRAFT_10414864	F000464	N/A	MKLSQQQKIRMYSHHDRDLDIEDEFWPILGILLAILGVWTTFIHWIDWATLDVIPWWAEPFTIAPILFMMIMKEHYDSLNPLHWWPMVWGYQAKLPHEDRITIRPLDTERIMQQHGGPLNVHIIDYQHIKFRRKKDAVIFGLRYF*