Scaffold LPjun09P162000mDRAFT_c1009148

Overview

Basic Information

• Taxon OID: 3300000163
• Scaffold ID: LPjun09P162000mDRAFT_c1009148
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2009 P16 2000m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1862
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: P16, Pacific Ocean
• Coordinates
  • Lat. (^o): 49.283333
  • Long. (^o): -134.666667
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F001493	Metagenome	683	Y
F023211	Metagenome / Metatranscriptome	211	Y

Sequences

Protein ID	Family	RBS	Sequence
LPjun09P162000mDRAFT_10091481	F023211	AGGA	MKRFKEYLREFAQRSTSEYVFDTHTDNSSSLKIPISGPMFKRIWPDTIRATVFHTTDLAGLERLGKLEGGKK
LPjun09P162000mDRAFT_10091482	F001493	N/A	MKRFKEFIKEGPPAWTESLSTMLFDLPREGLKDLKIPLSPAIFKRIWPESVRSRVFHLTDLDGVGKLKKMQGKKKSISAFYNIEDYILAGGIKTDGGYVVELEGDVLAAAPDDVSSQPDKTGRRWITFSSLMNPSTASDPGLGGGSKLKRIEKDLEKLLVEILVKNGMGPYKKGLTTRELNRGWSYLGKSTGGKEKSIIIKDYIDGMEKIMKKYSKPLKSVFTDYAFDKELVPDPDSGDKAMWDEIVVNNFKIKKIHVTEEFGEDWQEDDDIEGFPFELYPNGNGDLIDYIARTRN*
LPjun09P162000mDRAFT_10091485	F000245	AGGA	MKTFKEYRLDKKLDKYVSDEIKKRKLARFPVNATDDIKMRMKPNKPAFKFPSPNSDMMIHVFLRPMAGKKGMMAFNYQLEDK*