Scaffold TB03JUN2009H_c005972

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold TB03JUN2009H_c005972

Scaffold TB03JUN2009H_c005972

Overview

Basic Information
Taxon OID	3300000162 Open in IMG/M
Scaffold ID	TB03JUN2009H_c005972 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 hypolimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2011
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.0412	Long. (^o)	-89.6864	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013732	Metagenome / Metatranscriptome	268	Y
F059597	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
TB03JUN2009H_0059722	F059597	GAGG	VAEIVTGIPNFEESLEAMKISVXEAARKFVLQGAEVIKREAKKMFITGADAKITESWRSDAWPLPTRRTGNLMASIYSDGAKKTGEGKWESQTGPHIVYGRRIELGFHGSGRWPYYTTRPFPFMQPGIDNSIPQLDILFNSLVIAAQEA*
TB03JUN2009H_0059723	F013732	AGG	MPAINLPNGQSAILYARDEVTERTARTISRSYMKAAGTAAKLTNLGFDEAKPESWTIFAEISDEDRDNLDGYQAALIAGMVKSWSLGDLPTTDSALDLPKPVFEALAEACANEFNNTPDFSPDTDPKAPTAD*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.