NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SI48aug10_135mDRAFT_c1012295

Scaffold SI48aug10_135mDRAFT_c1012295


Overview

Basic Information
Taxon OID3300000160 Open in IMG/M
Scaffold IDSI48aug10_135mDRAFT_c1012295 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 48 08/11/10 135m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1646
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → environmental samples → uncultured Mediterranean phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet 48, Vancouver Island, BC, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)135
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038848Metagenome165Y
F074779Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
SI48aug10_135mDRAFT_10122951F074779AGGAMKTFNQYIFEAQAGFNTKDMIFTNAETPALILSPTALERAFGTLDTITAWHVTDLTGVKGLIKLQGKKSSISVLTEIEPSDQQPFEGIETGGGFVVELEGTELVSMDQDAWSERLEGGRRGISVTKELFPNMYRHLEFMVKKIYEKYSNKPYPNNARQGGFVLNELAKVLSQKEKGQFIKEYIDNCEEILKKNKRTRDELRKYGRAMNVSLNKKHFYNESIVNQISLKNVYVVSEKWEQFGRVDWGSDGEDELKMLKSVWKNIQI
SI48aug10_135mDRAFT_10122953F038848N/AMDGMEKVIKKNIDTFENAMLSYAKKRSTDLSWDEQIVNNFKVKTAHFFKLKLKIAQTEKEASLYPEHQELMEFAKSKGWKVKIWDAAIELEAYTREVAKKELGK*

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