Scaffold SI48aug10_135mDRAFT_c1004781

Overview

Basic Information

• Taxon OID: 3300000160
• Scaffold ID: SI48aug10_135mDRAFT_c1004781
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 48 08/11/10 135m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3197
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade → Methylophilales bacterium HTCC2181 (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet 48, Vancouver Island, BC, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022202	Metagenome / Metatranscriptome	215	N
F044735	Metagenome / Metatranscriptome	154	N

Sequences

Protein ID	Family	RBS	Sequence
SI48aug10_135mDRAFT_10047811	F044735	N/A	MIKNYLIKSIFIFTALITLFLILDHKVDERIAIMQKINH
SI48aug10_135mDRAFT_10047815	F022202	GAG	MNNKEQKILQDWIDTLQGIATKGMDAKTRIEARLLRGAWITENKRIENEIPEHDESFYQNVKEAIAKKKVKGSPKNIWTSFFENKFKAFVIVLLGTGFVYASKKTYEGVVSVADELNHIVLAKETTNVTVENEDDGKGLQMN*