Scaffold LPaug08P2610mDRAFT_c1012048

Overview

Basic Information

• Taxon OID: 3300000159
• Scaffold ID: LPaug08P2610mDRAFT_c1012048
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P26 10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1035
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: P26, Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008190	Metagenome / Metatranscriptome	337	Y
F018962	Metagenome / Metatranscriptome	232	Y
F046982	Metagenome / Metatranscriptome	150	N

Sequences

Protein ID	Family	RBS	Sequence
LPaug08P2610mDRAFT_10120481	F018962	N/A	KVIDDNHGGGREHFTSTDVYEEEGDKNQYTYVKRFFFDLCDDLGLEIGSKFDKNVLDINAQWGSHYEPTAKDIEFKIKKLKSELKELEEWKNI*
LPaug08P2610mDRAFT_10120482	F008190	AGGA	MEEHIEFNFIYSSDALRVKTFLGNVPRSIECINYMDIFNKLTKNDFYQYEPSDAVVSSYLMRQLQNAIGRNISTTIFYVLGSLNEETVGGIQSYVESLSNKPITYKIYHSPDIIVNGTAELFDDIIEFE*
LPaug08P2610mDRAFT_10120483	F046982	GAG	MKTHRIFNKGQNVYCLLASHTNPNILLPVKGTILDSKWDPVNPLYQIRIIKFYDNMKFLKQHFFDMNFRHVFENRARKMILKADDFKTAKVLEDRLNEKDRERFYVVVESVMCTKTKVGLSELFEKV