Scaffold LPaug08P2610mDRAFT_c1010827

Overview

Basic Information

• Taxon OID: 3300000159
• Scaffold ID: LPaug08P2610mDRAFT_c1010827
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P26 10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1121
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: P26, Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067644	Metagenome / Metatranscriptome	125	N
F085805	Metagenome	111	N
F092191	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
LPaug08P2610mDRAFT_10108271	F092191	GGAGG	MKLKQIVDITKILSDRKIPDDVLKFLDDEYYSISKKQNIKFGEMDLLHYIRVNIKDHKNLWKSYNEVEERLHKIKQIM
LPaug08P2610mDRAFT_10108273	F085805	AGGAGG	MKSKSISADADSIVSGLLVCKPLADEVYNKLRVLALKDEEEFRNNRYQERVKANNNWNCGG*
LPaug08P2610mDRAFT_10108275	F067644	N/A	IKEFVSLPEIQTLIDEGMMTVNAIDEQEEIYDENIDEFVEEINKTGMLK*