Scaffold LPaug08P2610mDRAFT_c1000231

Overview

Basic Information

• Taxon OID: 3300000159
• Scaffold ID: LPaug08P2610mDRAFT_c1000231
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P26 10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 13543
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (28.12%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: P26, Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013533	Metagenome / Metatranscriptome	270	Y
F031863	Metagenome / Metatranscriptome	181	Y
F057337	Metagenome / Metatranscriptome	136	N
F071647	Metagenome / Metatranscriptome	122	Y
F071664	Metagenome / Metatranscriptome	122	Y
F097115	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
LPaug08P2610mDRAFT_100023113	F057337	N/A	MTYSELSKLSIEELRNLNSMVIETIKSKKSLLALETKDSLYVGAMVSVDHPKMAGHELRITKINRTKAVCEMVNGKGSYNVPLTMINIING*
LPaug08P2610mDRAFT_100023115	F031863	N/A	MYWAKDMIPMNGNLFVVKRRFRHEPFQKVLSHFGSKTVCENYHCETLIKGGDGFFYLCDKVDDAQIV*
LPaug08P2610mDRAFT_100023116	F071664	N/A	MIKKIKSKLLTYLFTDWVKTETDLETLKITTQMLKNREIEVTGIKPVLGFRSHVTNTEIQ
LPaug08P2610mDRAFT_100023119	F071647	N/A	MTLRKTISKSEFTKSIESAKSNPFNNVRKPSTSKYLMLGGIPHKWVNGSLVSLTKLSK*
LPaug08P2610mDRAFT_10002313	F097115	N/A	MEINYILLGIVSSVIVFLLGYAVVVIFNLKNRIDYLESFLEDTDEKIDIVVSKSNQHLISQLEILEGKTEGNQKDIIALLDSRLDKLEYKFRADVTSGAEIVKVIEESQKSNERLDEFIRTFQAQ*
LPaug08P2610mDRAFT_100023131	F013533	N/A	MFEAEDIKTVEGFRKHFGEPKQGMLMDLSAEFIDSYHRYGTDPFELVDGFGLDWVKLIMNYNEDIEEYELCAIFRDLINEYIETKTKVK*