Scaffold LPaug08P2610mDRAFT_c1000209

Overview

Basic Information

• Taxon OID: 3300000159
• Scaffold ID: LPaug08P2610mDRAFT_c1000209
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P26 10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 14412
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (21.62%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: P26, Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024647	Metagenome / Metatranscriptome	205	Y
F045049	Metagenome / Metatranscriptome	153	N
F065434	Metagenome / Metatranscriptome	127	Y
F071292	Metagenome / Metatranscriptome	122	N
F084741	Metagenome / Metatranscriptome	112	N
F085783	Metagenome / Metatranscriptome	111	Y
F102062	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
LPaug08P2610mDRAFT_100020912	F085783	AGAAG	MLKWFRTNKMLRKLLSKKTEEADNIRTDWFRQRKEISELERELQLARRMWDELDKTKRY*
LPaug08P2610mDRAFT_100020913	F102062	N/A	MVITKKIKIMKILIWIKRDEAITGNISEYYTYLPFNESFEENNEDIEWVQVQITQDEFARLEDK*
LPaug08P2610mDRAFT_100020914	F071292	GAG	MEIFIVIAFNKADFYPVGVTDNLVLAKQYAQREFKERAKSHRVYVYKKMMNAPQMMEDKIVYKI*
LPaug08P2610mDRAFT_100020924	F065434	N/A	MKELRRNLSEPQIVWLQKIRNQSWLTLEDTEMINSVLYRTDYDETQKTWLNGIRETYLNTQPH*
LPaug08P2610mDRAFT_100020927	F084741	AGTAGG	VREFKPFKTNKMKNYQAILMIIIGFGLSIGTMNGFVQNYIGFAGVDNEIAFSFMGMMFGTLGIFGIDYKQLLNGLK*
LPaug08P2610mDRAFT_100020929	F024647	N/A	MNYLVHPSNIVSRAFGIDSFKQMISDEQIQFSELVDTSVEIAEEWTNDWDEGHGFGSSDGTYLLKDFIDTIISSYTKGYKTVFNPSLSIVKL*
LPaug08P2610mDRAFT_10002095	F045049	N/A	MIKKFKLFWDKFTTRFAVPLLIVSMVWNTYLGWESRTNARAAEYRLKSYILEHRHLPIEENIYTITSVDGEEIEIDESTYGEVDWRWLKENGWEDMIPSPMDNLTPEGISDIYLGKIFNGISNIKSKIVNWYESLFKEEYIKTMRG*