Scaffold LPaug08P2610mDRAFT

Basic Information
Taxon OID	3300000159 Open in IMG/M
Scaffold ID	LPaug08P2610mDRAFT_c1000012 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P26 10m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300000159 Open in IMG/M

Scaffold ID

LPaug08P2610mDRAFT_c1000012 Open in IMG/M

Source Dataset Name

Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P26 10m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	47539
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (29.03%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

47539

Total Scaffold Genes

31 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (29.03%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	P26, Pacific Ocean
Coordinates	Lat. (^o)	50.0	Long. (^o)	-145.0	Alt. (m)	Depth (m)	10
Location on Map

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Source Dataset Sampling Location

Location Name

P26, Pacific Ocean

Coordinates

Lat. (^o)

50.0

Long. (^o)

-145.0

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020012	Metagenome / Metatranscriptome	226	Y
F022889	Metagenome / Metatranscriptome	212	Y
F023556	Metagenome / Metatranscriptome	209	N
F054776	Metagenome / Metatranscriptome	139	N

Sequences

Protein ID	Family	RBS	Sequence
LPaug08P2610mDRAFT_100001227	F023556	N/A	MNIFTLKNIMKEVNAPNTFQGVPSDKPNGDRYQFYHPLYWIFKIENMRIKTLDARLKDKRKPHARFDVFMYLTTDDSQGELFVRPQDYIYEQVGNDFYVKMIKENFPLIDRNGDAWSFSINDRIFIKGDIEKVN*
LPaug08P2610mDRAFT_100001228	F022889	N/A	MSRKAPKIYAGNTVKKRDRQSFKNFVLEVIKDTFINEFTPTSSSLDAPTEKLFTLFLGTKDGNNDGDLLDRVDINGYRFNYEDLQVDNAFDYLDVFLYGVKQDRNKYDVKLFNGVGTELLSGQFASGSREIRMVFTEDITRVPLEVPLDAFTIKGKIVEIQ*
LPaug08P2610mDRAFT_10000123	F054776	N/A	MPKTENLEKEILDRLRFLRDETDKIVIFLGQLAVQERTINKKLKEISDNQEKYGAMNDKYIYELEEKLGELDKKYKNGQIDLDKGTITVEE*
LPaug08P2610mDRAFT_100001230	F020012	N/A	MAEELIPLNAFKSVLTTLTGDNDIVYSAPKGVSTILLSAQITNTGDINEPVTISITSNRDLPVPQLDSIDNSGSFLSASALIAKNQTFLEKESAAFINFQNNLTQIPFSFTSSFFEAYVRTAVDGVEADLIGGGTLQSKKAALSYYNKNGEILIPNDYYTSSYQSIDYAGKLIEQILIGESVTGSINVTRFFQDDVTQSFDNSLIVESGSLSASIDLIKAISDTISNPTRVRQQPVDLITNVTIPAGDSLSPIVAGKLVLEQQFSLIVSGSTNLTVILSILESANE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold LPaug08P2610mDRAFT_c1000012

Overview

Ecosystem & Geography

Associated Families

Sequences