Scaffold LPaug08P261000mDRAFT_c1009534

Overview

Basic Information

• Taxon OID: 3300000157
• Scaffold ID: LPaug08P261000mDRAFT_c1009534
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P26 1000m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1569
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Line P, North Pacific Ocean
• Coordinates
  • Lat. (^o): 48.35
  • Long. (^o): -123.3
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004843	Metagenome	421	Y
F027016	Metagenome / Metatranscriptome	196	Y
F050431	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
LPaug08P261000mDRAFT_10095341	F027016	AGGA	MIELEQEALLLNREMLAEVKNLIDDINEPKPSHLRQFIHPQWGSILGSEEEIRLAVLQDEVEIWEQRVEDDPDSIPYLGYIRDTLKS
LPaug08P261000mDRAFT_10095342	F004843	N/A	MMQKEDKIMKWMFIIVIAIALSLNGCADTADAEDSTAITPAEQQQNRTADASGTTWVAIVMTWNPVVYTIDKEFSSEVECWNYYDNGAGETKMLNSYGTQILDHQGNKPDAEYMKKHRPQHRVYPTRMYKNFGGWMMWLTCDIKGRNEGL*
LPaug08P261000mDRAFT_10095344	F050431	N/A	MKYMRYAVGAFILYTVGYLGGDIIIVSIWMGIAYGFIDLMKQGEI*