Scaffold LPaug08P261000mDRAFT_c1004278

Overview

Basic Information

• Taxon OID: 3300000157
• Scaffold ID: LPaug08P261000mDRAFT_c1004278
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P26 1000m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2439
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Line P, North Pacific Ocean
• Coordinates
  • Lat. (^o): 48.35
  • Long. (^o): -123.3
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001493	Metagenome	683	Y
F005685	Metagenome / Metatranscriptome	393	Y
F031252	Metagenome / Metatranscriptome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
LPaug08P261000mDRAFT_10042781	F005685	N/A	SSFEDKILGTLKRGPCDLMTLSHKLKEDIMPVSSMLEHLKVYDKVEMFKEKWQIKRTKKN
LPaug08P261000mDRAFT_10042784	F001493	AGAAG	MKSFKQYLKEGPPAWTESLSTMLXDXPREGLKDLKIPLSPAIFKRIWPESVRSTVFHLTDYDGVAKLKKMQGKKKSISAFYNIVDYILASGIKTYGGYVVELEGDVLAAAPDDISSQPDKTGRRWLTFSSLMNPSTASDPGMGGGSKLKKIEKDLEKLLVEILVKNGMGPYKKGLTTRELNRGWSYLGKSTGGKEKSIIIKDYIDGMEKIMKKYSKPLKSVFTDYAFDKELVPDPDSGEKAMWDEIVVNNFKIKKIHVTEEFGEDWQDDDDIEGFPFEIYPNGNGDLIDYIARTKNS*
LPaug08P261000mDRAFT_10042785	F031252	AGGA	MKSFKQYLREFAQRSTSEYVFDTHTDNSSSLKIPISGPMFKRIWPDTIRA