Scaffold SI39nov09_135mDRAFT_c1020531

Overview

Basic Information

• Taxon OID: 3300000153
• Scaffold ID: SI39nov09_135mDRAFT_c1020531
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 39 11/10/09 135m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1264
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet 39, Vancouver Island, BC, Canada
• Coordinates
  • Lat. (^o): 48.35
  • Long. (^o): -123.29
  • Depth (m): 135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F002715	Metagenome / Metatranscriptome	535	Y
F043074	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
SI39nov09_135mDRAFT_10205311	F002715	N/A	RGRQIDNLLSKLDLTADKLQELTVQIIKLNTRQEESLRYSTNMSGEFKILHTRIGDLHDKQLAMYKEVEVRLDRLDQYKSKLMGMIIVVGGVVGTIVATVISVFLKE*
SI39nov09_135mDRAFT_10205312	F000245	AGGA	MKTFTRFKESKFLDDRLDKIVHDEIIKRKFARFPINATDDIGMRLPPNKPAFTFPSPNSDMKIQVFLRKMTPSKGQPKGMMAFNYQFEDK*
SI39nov09_135mDRAFT_10205315	F043074	GAG	MKTFSQYLEEANSKYIVSKNPSDKKWYVMGHVGNNKWMPVSNEFKNK